Are the invoices being run on your workstation? Or by someone else? If by someone else, do they have the ACCOUNTING menu on their workstation? If not it's been disabled and caused Timeslips to ignore the Cash/Accrual flag and automatically assume a cash-basis company effectively marking the invoice transactions so that they do not 'need transfer' status when they are created. Go to Setup, Performance Settings and re-enable Accounting Link to correct for the future.
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